MirGeneDB 2.1

MirGeneDB ID

Xtr-Mir-1-P4

Family name MIR-1 (all species)
Seed GGAAUGU
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-1b
Paralogues Xtr-Mir-1-P1  Xtr-Mir-1-P2  Xtr-Mir-1-P3 
Orthologues Aae-Mir-1  Aca-Mir-1-P4  Ami-Mir-1-P4  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Cbr-Mir-1  Cel-Mir-1  Cgi-Mir-1  Cin-Mir-1  Cli-Mir-1-P4  Cmi-Mir-1-P4  Cpi-Mir-1-P4  Cte-Mir-1  Dan-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dpu-Mir-1  Dsi-Mir-1  Dya-Mir-1  Esc-Mir-1  Gga-Mir-1-P4  Gja-Mir-1-P4c  Gja-Mir-1-P4d  Hme-Mir-1  Isc-Mir-1  Lan-Mir-1  Lch-Mir-1-P4  Lgi-Mir-1  Mun-Mir-1-P4  Oan-Mir-1-P4  Obi-Mir-1  Ovu-Mir-1  Pbv-Mir-1-P4  Pfl-Mir-1  Pma-Mir-1-o4  Pmi-Mir-1  Sko-Mir-1  Spt-Mir-1-P4  Spu-Mir-1  Sto-Mir-1-P4  Tca-Mir-1  Tgu-Mir-1-P4  Xbo-Mir-1  Xla-Mir-1-P4a  Xla-Mir-1-P4b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)
chr2: 56468864-56468924 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1-P4)
Mir-133-P4-v1 chr2: 56468434-56468492 [-] UCSC Ensembl
Mir-133-P4-v2 chr2: 56468434-56468492 [-] UCSC Ensembl
Mir-1-P4 chr2: 56468864-56468924 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCAGUGGCUUUGAUGUCCACCUUUAGGGCACAUACUUCUUUAUAUGCCCAUACUGAAUGAAAAUGCUAUGGAAUGUUAAGAAGUAUGUAACCUAAGGGGUUGCCUUUUCAUCUGCGCCAC
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Structure
        10        20          30        40        50        60
UUCAGUGGCUUUGAUGUCCA--|       GC           U    GC     CUGAAU 
                      CCUUUAGG  ACAUACUUCUU AUAU  CCAUA      G
                      GGGAAUCC  UGUAUGAAGAA UGUA  GGUAU      A
CACCGCGUCUACUUUUCCGUUG^       AA           U    A-     CGUAAA 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Em Em Em Em He
Star sequence

Xtr-Mir-1-P4_5p*

mirBase accessionNone
Sequence
0- ACAUACUUCUUUAUAUGCCCAUA -23
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Mature sequence

Xtr-Mir-1-P4_3p

mirBase accessionMIMAT0003648
Sequence
39- UGGAAUGUUAAGAAGUAUGUAA -61
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Proposed targets TargetScanVert: xtr-miR-1b