MirGeneDB 2.1

MirGeneDB ID

Oan-Mir-1-P4

Family name MIR-1 (all species)
Seed GGAAUGU
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-1b
Paralogues Oan-Mir-1-P1  Oan-Mir-1-P2  Oan-Mir-1-P3 
Orthologues Aae-Mir-1  Aca-Mir-1-P4  Ami-Mir-1-P4  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Cbr-Mir-1  Cel-Mir-1  Cgi-Mir-1  Cin-Mir-1  Cli-Mir-1-P4  Cmi-Mir-1-P4  Cpi-Mir-1-P4  Cte-Mir-1  Dan-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dpu-Mir-1  Dsi-Mir-1  Dya-Mir-1  Esc-Mir-1  Gga-Mir-1-P4  Gja-Mir-1-P4c  Gja-Mir-1-P4d  Hme-Mir-1  Isc-Mir-1  Lan-Mir-1  Lch-Mir-1-P4  Lgi-Mir-1  Mun-Mir-1-P4  Obi-Mir-1  Ovu-Mir-1  Pbv-Mir-1-P4  Pfl-Mir-1  Pma-Mir-1-o4  Pmi-Mir-1  Sko-Mir-1  Spt-Mir-1-P4  Spu-Mir-1  Sto-Mir-1-P4  Tca-Mir-1  Tgu-Mir-1-P4  Xbo-Mir-1  Xla-Mir-1-P4a  Xla-Mir-1-P4b  Xtr-Mir-1-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041743.1: 39748483-39748544 [+]
Clustered miRNAs
(< 50kb from Mir-1-P4)
Mir-1-P4 NC_041743.1: 39748483-39748544 [+]
Mir-133-P4-v1 NC_041743.1: 39748895-39748952 [+]
Mir-133-P4-v2 NC_041743.1: 39748895-39748952 [+]
Precursor
(pre-Mir +30nt flank)
GCAAGUCGGAGUCCUCGGGCUCCCCGGGCCACACACUUCUUCAUAUGCCCAUAGGGAGCUGCCCGAACUAUGGAAUGUUAAGAAGUGUGUGUUCUUGGGGGCUACCACCUGCGCCCAGCCCU
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Structure
        10          20        30        40        50        60 
GCAAGUCGGAGUCCUCG--|      C  GC            C    GC     GGGAGCU 
                   GGCUCCC GG  CACACACUUCUU AUAU  CCAUA       \
                   UCGGGGG UC  GUGUGUGAAGAA UGUA  GGUAU       G
UCCCGACCCGCGUCCACCA^      U  UU            U    A-     CAAGCCC 
120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Star sequence

Oan-Mir-1-P4_5p* (predicted)

mirBase accessionNone
Sequence
0- ACACACUUCUUCAUAUGCCCAUA -23
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Mature sequence

Oan-Mir-1-P4_3p

mirBase accessionMIMAT0007149
Sequence
40- UGGAAUGUUAAGAAGUGUGUGU -62
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