| MirGeneDB ID | Xtr-Novel-11 |
|---|
| Family name |
XEN-NOVEL-11 (all species) |
|---|
| Seed |
UGCUGAC |
|---|
| Species |
Tropical clawed frog (Xenopus tropicalis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Xla-Novel-11-P1
Xla-Novel-11-P2
|
|---|
| Node of Origin (locus) |
Xenopus
|
|---|
| Node of Origin (family) |
Xenopus
|
|---|
Genome context
(xenTro9_add) |
chr1: 78077403-78077458 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CUUGAAGCGUCUAUCUGUAUUAACCCCUUGAGUGUCAGAGGGGUAAACAAUGCAUCACUGAGUAUUGCUGACACCUCUGGCAUUAAUGGUGUUAUUAAACUGCAUUCAAUCAACAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUUGAAGCGUCUAUCUG--| U C UUG G AAA CAUC
UA UAAC CC AGUGUCAGAGG GU CAAUG A
AU AUUG GG UUACGGUCUCC CA GUUAU C
CACAACUAACUUACGUCAA^ U U UAA A GUC GAGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Xtr-Novel-11_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGUGUCAGAGGGGUAAACAAUG -22
Get sequence
|
|---|
| Mature sequence |
Xtr-Novel-11_3p |
| mirBase accession | None |
|---|
| Sequence |
34- UUGCUGACACCUCUGGCAUUAA -56
Get sequence
|
|---|
