| MirGeneDB ID | Xla-Novel-11-P1 |
|---|
| Family name |
XEN-NOVEL-11 (all species) |
|---|
| Seed |
UGCUGAC |
|---|
| Species |
African clawed frog (Xenopus laevis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Xla-Novel-11-P2
|
|---|
| Orthologues |
Xtr-Novel-11
|
|---|
| Node of Origin (locus) |
X. laevis
|
|---|
| Node of Origin (family) |
Xenopus
|
|---|
Genome context
(GCF_001663975.1_XLA_v2) |
NC_030724.1: 93603278-93603333 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UUGGAUCUUGAAAUCUGUAUUAACCCCUUGAGUGUCAGAGGGGUAAACAAUGCAUCACCAAGUAUUGCUGACACCUCUGGCAUUAAUGGUGUUAUUAAACUGCAUUCAAUCAACGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUGGAUCUUGAAAUCUG--| U C UUG G AAA CAUC
UA UAAC CC AGUGUCAGAGG GU CAAUG A
AU AUUG GG UUACGGUCUCC CA GUUAU C
CGCAACUAACUUACGUCAA^ U U UAA A GUC GAAC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Xla-Novel-11-P1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGUGUCAGAGGGGUAAACAAUG -22
Get sequence
|
|---|
| Mature sequence |
Xla-Novel-11-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
34- UUGCUGACACCUCUGGCAUUAA -56
Get sequence
|
|---|
