MirGeneDB 2.1

MirGeneDB ID

Xla-Novel-3-P1

Family name XEN-NOVEL-3 (all species)
Seed GCUGGAG
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Novel-3-P2-v1  Xla-Novel-3-P2-v2 
Orthologues Xtr-Novel-3 
Node of Origin (locus) X. laevis
Node of Origin (family) Xenopus
Genome context
(GCF_001663975.1_XLA_v2)
NC_030740.1: 95387196-95387252 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCACAGAAGUUAACAAUUAACUCCUUCACUGCUGGAGUGGACAUCAAUGCAUUAUUUUGCAAGGCGUUGUAGGCCUCUCCAGCAUUGAAUGGGUUAAACUACCCUGGUCACCAUGU
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Structure
        10          20        30        40        50        
CUCACAGAAGUUAACAA--|      C    C        U  ACAU      AUUAUU 
                   UUAACUC UUCA UGCUGGAG GG    CAAUGC      \
                   AAUUGGG AAGU ACGACCUC CC    GUUGCG      U
UGUACCACUGGUCCCAUCA^      U    U        U  GGAU      GAACGU 
     110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsNo
Tissue expression
 +
Eg He Re St St St St
Mature sequence

Xla-Novel-3-P1_5p

mirBase accessionNone
Sequence
0- UGCUGGAGUGGACAUCAAUGCA -22
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Star sequence

Xla-Novel-3-P1_3p*

mirBase accessionNone
Sequence
35- CGUUGUAGGCCUCUCCAGCAUU -57
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