MirGeneDB 2.1

MirGeneDB ID

Xtr-Novel-3

Family name XEN-NOVEL-3 (all species)
Seed GCUGGAG
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID
Paralogues
Orthologues Xla-Novel-3-P1  Xla-Novel-3-P2-v1  Xla-Novel-3-P2-v2 
Node of Origin (locus) Xenopus
Node of Origin (family) Xenopus
Genome context
(xenTro9_add)
chr9: 24365337-24365393 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCACAGAAGUUAAUCAUUAACUCCUUCACUGCUGGAGUGGACAUCAAUGCAUUAUUUUGCAAGGCGUUGUAGGCCUCUCCAGCAUUGAAUGGGUUAAACUACCCUGGUCACCAUGU
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Structure
        10          20        30        40        50        
CUCACAGAAGUUAAUCA--|      C    C        U  ACAU      AUUAUU 
                   UUAACUC UUCA UGCUGGAG GG    CAAUGC      \
                   AAUUGGG AAGU ACGACCUC CC    GUUGCG      U
UGUACCACUGGUCCCAUCA^      U    U        U  GGAU      GAACGU 
     110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsNo
Tissue expression
 +
Br Em Em Em Em He
Mature sequence

Xtr-Novel-3_5p

mirBase accessionNone
Sequence
0- UGCUGGAGUGGACAUCAAUGCA -22
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Star sequence

Xtr-Novel-3_3p*

mirBase accessionNone
Sequence
35- CGUUGUAGGCCUCUCCAGCAUU -57
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