| MirGeneDB ID | Xla-Novel-10 |
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| Family name |
XLA-NOVEL-10 (all species) |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
X. laevis
|
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| Node of Origin (family) |
X. laevis
|
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Genome context
(GCF_001663975.1_XLA_v2) |
NC_030736.1: 45266004-45266062 [+]
UCSC
Ensembl
|
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| Seed |
AAUUGAU |
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Precursor
(pre-Mir +30nt flank) |
CAAUCCAGGGAAUCCAGAGCAUUGAGCAGUAAAUUGAUUCUGUUGAACUCAAGAUUGACCCGUGUUGAGUUUAACUGUAUUGGUUUGGCUGCUCCAUGCUGUUAAACUAUAUUCCGCUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAAUCCAGGGAAUCCAG-- U -| UG UCU AGAUUG
AGCAU GAGCAG UAAAU AU GUUGAACUCA A
UCGUA CUCGUC GUUUG UA CAAUUUGAGU C
CUCGCCUUAUAUCAAAUUG C G^ GU UGU UGUGCC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Mature sequence |
Xla-Novel-10_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AAAUUGAUUCUGUUGAACUCA -21
Get sequence
|
|---|
| Star sequence |
Xla-Novel-10_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- AGUUUAACUGUAUUGGUUUGGC -59
Get sequence
|
|---|
