| MirGeneDB ID | Xla-Novel-10 |
|---|
| Family name |
XLA-NOVEL-10 (all species) |
|---|
| Species |
African clawed frog (Xenopus laevis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
X. laevis
|
|---|
| Node of Origin (family) |
X. laevis
|
|---|
Genome context
(GCF_001663975.1_XLA_v2) |
NC_030736.1: 45266004-45266062 [+]
UCSC
Ensembl
|
|---|
| Seed |
AAUUGAU |
|---|
Precursor
(pre-Mir +30nt flank) |
CAAUCCAGGGAAUCCAGAGCAUUGAGCAGUAAAUUGAUUCUGUUGAACUCAAGAUUGACCCGUGUUGAGUUUAACUGUAUUGGUUUGGCUGCUCCAUGCUGUUAAACUAUAUUCCGCUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAAUCCAGGGAAUCCAG-- U -| UG UCU AGAUUG
AGCAU GAGCAG UAAAU AU GUUGAACUCA A
UCGUA CUCGUC GUUUG UA CAAUUUGAGU C
CUCGCCUUAUAUCAAAUUG C G^ GU UGU UGUGCC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Xla-Novel-10_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AAAUUGAUUCUGUUGAACUCA -21
Get sequence
|
|---|
| Star sequence |
Xla-Novel-10_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- AGUUUAACUGUAUUGGUUUGGC -59
Get sequence
|
|---|
