| MirGeneDB ID | Xla-Novel-1 |
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| Family name |
XLA-NOVEL-1 (all species) |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
X. laevis
|
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| Node of Origin (family) |
X. laevis
|
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Genome context
(GCF_001663975.1_XLA_v2) |
NC_030740.1: 80641622-80641683 [+]
UCSC
Ensembl
|
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| Seed |
CUUUUGU |
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Precursor
(pre-Mir +30nt flank) |
UUUUAUAAUGUGUCAAAAGCCUAGACAUGCUCUUUUGUCAGCUUUUGGAUUCAAAAUGGUUGCAUUGCUGAGCCAAUAGCAAACAAGGGAGCAUGUAUAUGUAGCAAUCUCCUGCGAUGGUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UUUUAUAAUGUGUCAAAA--| C G CA U A AAAUGGU
GC UA ACAUGCUCUUUUGU GCU UUGG UUCA \
UG AU UGUACGAGGGAACA CGA AACC GAGU U
UUGGUAGCGUCCUCUAACGA^ U A AA U - CGUUACG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Xla-Novel-1_5p |
| mirBase accession | None |
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| Sequence |
0- UCUUUUGUCAGCUUUUGGAUUCA -23
Get sequence
|
|---|
| Star sequence |
Xla-Novel-1_3p* |
| mirBase accession | None |
|---|
| Sequence |
40- AGCCAAUAGCAAACAAGGGAGC -62
Get sequence
|
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