| MirGeneDB ID | Xla-Mir-12486-P2 |
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| Family name |
MIR-12486 (all species) |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
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| Paralogues |
Xla-Mir-12486-P1
|
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| Orthologues |
Xtr-Mir-12486
|
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| Node of Origin (locus) |
X. laevis
|
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| Node of Origin (family) |
Xenopus
|
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Genome context
(GCF_001663975.1_XLA_v2) |
NC_030725.1: 82130448-82130503 [-]
UCSC
Ensembl
|
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| Seed |
UGCUGAC |
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Precursor
(pre-Mir +30nt flank) |
UCUUGAAGCGUCUAUUGUAUUAACCCCUUGAGUGUCAGAGGGGUAAACAAUGCAUCACCGAGUAUUGCUGACACCUCUGGCAUUAAUGGUGUUAUUAAACUGCAUUCAAUCAACAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCUUGAAGCGUCUAUUG--| U C UUG G AAA CAUC
UA UAAC CC AGUGUCAGAGG GU CAAUG A
AU AUUG GG UUACGGUCUCC CA GUUAU C
CACAACUAACUUACGUCAA^ U U UAA A GUC GAGC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Xla-Mir-12486-P2_5p* |
| mirBase accession | None |
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| Sequence |
0- AGUGUCAGAGGGGUAAACAAUG -22
Get sequence
|
|---|
| Mature sequence |
Xla-Mir-12486-P2_3p |
| mirBase accession | None |
|---|
| Sequence |
34- UUGCUGACACCUCUGGCAUUAA -56
Get sequence
|
|---|
