MirGeneDB ID | Xbo-Novel-9 |
Family name |
XBO-NOVEL-9 (all species) |
Species |
Xenoturbella (Xenoturbella bocki) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
X. bocki
|
Node of Origin (family) |
X. bocki
|
Genome context (genome.xe) |
scaffold628: 118237-118291 [-]
UCSC
Ensembl
|
Seed |
AUACAUC |
Precursor (pre-Mir +30nt flank) |
AUGGAUCCCCCCAGGCACAGCGGCUGAGUGUCUGGAUACGGGUUAUGUACAGGACCUCUCGUUGUAUACAUCCUGUAUCCGGACCCUUGCUGUUGUACAUUCGACCGGCAGUCGA
Get precursor sequence
|
Structure | 10 20 30 40 50
AUGGAUCCCCCCAGGCA---| U U UUA GGACC
CAGCGGC GAG GUCUGGAUACGGG UGUACA \
GUUGUCG UUC CAGGCCUAUGUCC AUAUGU U
AGCUGACGGCCAGCUUACAU^ - C UAC UGCUC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Xbo-Novel-9_5p* |
mirBase accession | None |
Sequence |
0- UCUGGAUACGGGUUAUGUACA -21
Get sequence
|
Mature sequence |
Xbo-Novel-9_3p |
mirBase accession | None |
Sequence |
34- UAUACAUCCUGUAUCCGGACC -55
Get sequence
|