MirGeneDB 3.0

MirGeneDB ID

Xbo-Novel-9

Family name XBO-NOVEL-9 (all species)
Species Xenoturbella (Xenoturbella bocki)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) X. bocki
Node of Origin (family) X. bocki
Genome context
(genome.xe)
scaffold628: 118237-118291 [-] UCSC Ensembl
Seed AUACAUC
Precursor
(pre-Mir +30nt flank)
AUGGAUCCCCCCAGGCACAGCGGCUGAGUGUCUGGAUACGGGUUAUGUACAGGACCUCUCGUUGUAUACAUCCUGUAUCCGGACCCUUGCUGUUGUACAUUCGACCGGCAGUCGA
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Structure
        10           20        30        40        50       
AUGGAUCCCCCCAGGCA---|      U   U             UUA      GGACC 
                    CAGCGGC GAG GUCUGGAUACGGG   UGUACA     \
                    GUUGUCG UUC CAGGCCUAUGUCC   AUAUGU     U
AGCUGACGGCCAGCUUACAU^      -   C             UAC      UGCUC 
   110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
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Star sequence

Xbo-Novel-9_5p*

mirBase accessionNone
Sequence
0- UCUGGAUACGGGUUAUGUACA -21
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Mature sequence

Xbo-Novel-9_3p

mirBase accessionNone
Sequence
34- UAUACAUCCUGUAUCCGGACC -55
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