MirGeneDB 2.1

MirGeneDB ID

Xbo-Novel-6

Family name XBO-NOVEL-6 (all species)
Seed UUAGCUU
Species Xenoturbella (Xenoturbella bocki)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) X. bocki
Node of Origin (family) X. bocki
Genome context
(Xbocki_plus)
3C-assembly_contig_1899: 5831313-5831372 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUGAAUUCAAAACUUUGUCAGUGUUGACGCGUGUGAUAUUCAGGGCUAGCCUUUAUUCUCAGUCAAGAUUAGCUUGGGUGUCACAUGUGUUACCACUGAUCAAAUCAACGUUAUGAAAC
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Structure
        10          20        30        40        50          
UUUGAAUUCAAAACUUU--|      U                    G   GC  UUAUUC 
                   GUCAGUG UGACGCGUGUGAUAUUCAGG CUA  CU      \
                   UAGUCAC AUUGUGUACACUGUGGGUUC GAU  GA      U
CAAAGUAUUGCAACUAAAC^      C                    -   UA  ACUGAC 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
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Star sequence

Xbo-Novel-6_5p*

mirBase accessionNone
Sequence
0- CGUGUGAUAUUCAGGGCUAGCCU -23
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Mature sequence

Xbo-Novel-6_3p

mirBase accessionNone
Sequence
38- AUUAGCUUGGGUGUCACAUGUG -60
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