| MirGeneDB ID | Xbo-Novel-5 |
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| Family name |
XBO-NOVEL-5 (all species) |
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| Seed |
UUGGUUC |
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| Species |
Xenoturbella (Xenoturbella bocki) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
X. bocki
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| Node of Origin (family) |
X. bocki
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Genome context
(Xbocki_plus) |
3C-assembly_contig_1899: 5730645-5730703 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GAGGGAGAUGGUGGCUUGCCUAUCCUAACAAUUGGUUCUUCUUGUAUUCCCAUUGAUAUAUGUGAUGGGGGUACAGGGGCAACCGAUGUUAUGUUAGUGUCUGUUCUUCAACACAUCCA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GAGGGAGAUGGUGGCUU-- -| UCC A C UUGAUA
GC CUA UAACA UUGGUU UUCUUGUAUUCCCA \
UG GAU AUUGU AGCCAA GGGGACAUGGGGGU U
ACCUACACAACUUCUUGUC U^ UGU - C AGUGUA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Xbo-Novel-5_5p |
| mirBase accession | None |
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| Sequence |
0- AUUGGUUCUUCUUGUAUUCCCA -22
Get sequence
|
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| Star sequence |
Xbo-Novel-5_3p* |
| mirBase accession | None |
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| Sequence |
37- GGGGUACAGGGGCAACCGAUGU -59
Get sequence
|
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