MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-7643

Family name MIR-7643 (all species)
Seed UGACUGA
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-7643
Paralogues
Orthologues
Node of Origin (locus) T. guttata
Node of Origin (family) T. guttata
Genome context
(TaeGut1_add)
1: 21126216-21126275 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UACCUGGACAUGGCAGUGUGCAAGGGGAAGGUGACUGAGACAUGAUGCUCAUAAUGACCUUUGUAAAUGACAUCUGUUUCUCAGUCAACAACUCCCUUGAUUUGCCCUCAUCCUGACAGU
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Structure
        10        20         30         40         50         
UACCUGGACAUGGCAGUGUG-       AAG -         C  -|   C    AAUGAC 
                     CAAGGGG   G UGACUGAGA AU GAUG UCAU      C
                     GUUCCCU   C ACUGACUCU UG CUAC AGUA      U
UGACAGUCCUACUCCCGUUUA       CAA A         U  U^   -    AAUGUU 
.       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Mir-7643_5p

mirBase accessionMIMAT0029786
Sequence
0- GUGACUGAGACAUGAUGCUCAU -22
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Star sequence

Tgu-Mir-7643_3p*

mirBase accessionMIMAT0029787
Sequence
38- GACAUCUGUUUCUCAGUCAACA -60
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