| MirGeneDB ID | Tgu-Mir-2962 |
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| Family name |
MIR-2962 (all species) |
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| Seed |
CAUCCCC |
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| Species |
Zebra finch (Taeniopygia guttata) |
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| MiRBase ID |
tgu-mir-2962
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
T. guttata
|
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| Node of Origin (family) |
T. guttata
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Genome context
(TaeGut1_add) |
17: 6697965-6698023 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGUGGGGCCUCGUCCAGCCCUGGGAAGGGGAGGAGCGAGGAAGGGGAUGGGAUGGGCUAACCAGGGUCCAUCCCCUGCCUCUCUUCUCCCUUUCCUGGGGCAGCUCCUGCAGCAAAACA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UGUGGGGCCUCGUCCAG--| UG C A AUGGGCU
CCC GGAAGGGGAGGAG GAGG AGGGGAUGGG \
GGG CCUUUCCCUCUUC CUCC UCCCCUACCU A
ACAAAACGACGUCCUCGAC^ GU U G GGGACCA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Tgu-Mir-2962_5p* |
| mirBase accession | MIMAT0014462 |
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| Sequence |
0- AGGAGCGAGGAAGGGGAUGGGA -22
Get sequence
|
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| Mature sequence |
Tgu-Mir-2962_3p |
| mirBase accession | MIMAT0014621 |
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| Sequence |
37- CCAUCCCCUGCCUCUCUUCUCC -59
Get sequence
|
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