| MirGeneDB ID | Sne-Novel-11 |
|---|
| Family name |
SNE-NOVEL-11 (all species) |
|---|
| Species |
Seison (Seison nebaliae) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
S. nebaliae
|
|---|
| Node of Origin (family) |
S. nebaliae
|
|---|
Genome context
(S.nebaliae-strainB-GA2.2-3295Contigs_manual) |
k141_3391: 171847-171932 [-]
Ensembl
|
|---|
| Seed |
AGUCUGC |
|---|
Precursor
(pre-Mir +30nt flank) |
AAGUUUUCUGAUUAUUUUUGGUAAACUAUCUACUUUGUGUUUUAAAGACUGGAUUGUUAAAUAUAUAAGAAUUUGUUAAUUCGAAUUGAAUUCUAGUCUGCAACGCACAAAGUGGUUAGUUCCAAUAAAGCGUCGAACGAUAAUAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60 70
AAGUUUUCUGAUUAUUU----| UA U U AA UUGUUAAAUAUAUAAGAA
UUGG AACUA CUACUUUGUGU UU AGACUGGA U
AACC UUGAU GGUGAAACACG AA UCUGAUCU U
UAUAAUAGCAAGCUGCGAAAU^ -- U C CG UAAGUUAAGCUUAAUUGU
140 130 120 110 100 90 80 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Sne-Novel-11_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UACUUUGUGUUUUAAAGACUGGA -23
Get sequence
|
|---|
| Mature sequence |
Sne-Novel-11_3p |
| mirBase accession | None |
|---|
| Sequence |
63- UAGUCUGCAACGCACAAAGUGGU -86
Get sequence
|
|---|
