| MirGeneDB ID | Sne-Novel-10 |
|---|
| Family name |
SNE-NOVEL-10 (all species) |
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| Species |
Seison (Seison nebaliae) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
S. nebaliae
|
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| Node of Origin (family) |
S. nebaliae
|
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Genome context
(S.nebaliae-strainB-GA2.2-3295Contigs_manual) |
k141_3266: 4354-4450 [+]
Ensembl
|
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| Seed |
UGCGUAG |
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Precursor
(pre-Mir +30nt flank) |
AUGUUAUUUUGUAUCUUUUCUUCAGAGAAGUUGCGUAGGCCCAUUAUAUUGAUUGUUUCGAUUGUUAGAGAAUGAAUUGUUCUAAUUCGUAAAAUAUUCGCUAUCAAUAUUUUGGUUCUAAGCUACAUCUCAUUCACCAAUUGUCAUCAAAUUGAAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60 70
AUGUUAUUUUGUAUCUUUUCUUCA--| A U G GC UU UUGUUUCGAUUGUUAGAGAAUGAAU
GAGA GU GC UAG CCA AUAUUGA \
CUCU CA CG AUC GGU UAUAACU U
CAAGUUAAACUACUGUUAACCACUUA^ A U A UU UU AUCGCUUAUAAAAUGCUUAAUCUUG
150 140 130 120 110 100 90 80 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Sne-Novel-10_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UUGCGUAGGCCCAUUAUAUUGA -22
Get sequence
|
|---|
| Star sequence |
Sne-Novel-10_3p* |
| mirBase accession | None |
|---|
| Sequence |
75- AAUAUUUUGGUUCUAAGCUACA -97
Get sequence
|
|---|
