| MirGeneDB ID | Sne-Novel-1 |
|---|
| Family name |
SNE-NOVEL-1 (all species) |
|---|
| Species |
Seison (Seison nebaliae) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
S. nebaliae
|
|---|
| Node of Origin (family) |
S. nebaliae
|
|---|
Genome context
(S.nebaliae-strainB-GA2.2-3295Contigs_manual) |
k141_1031: 2888-3018 [-]
Ensembl
|
|---|
| Seed |
UUGACAA |
|---|
Precursor
(pre-Mir +30nt flank) |
AUUCAUUUUUCUGUUUCAAAUCGCAAGUCACUUGACAAUGGUCGAUUGGAAUAUUUUUCUCAACUCUCUUCUAUAUAAUGACUGACUAUAAUAAAGUUGUGAAUUGAAAAUUUCCCCGCGAAUCAAAUGGGUUAAGUAUUCUAAUCAGCUCUUGUCAAUUGAAUUUCGAUCACGUUCAUUUCAUCAUUCAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60 70 80 90
AUUCAUUUUUCUGUUUCAA--| C G C U C UAUUUUUCUCAACUCUCUUCUAUAUAAUGACUGACUAUAAUAA
AUCG AA UCA UUGACAA GGU GAUUGGAA \
UAGC UU AGU AACUGUU UCG CUAAUCUU A
AACUUACUACUUUACUUGCAC^ U A U C A AUGAAUUGGGUAAACUAAGCGCCCCUUUAAAAGUUAAGUGUUG
. 180 170 160 150 140 130 120 110 100 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Sne-Novel-1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CUUGACAAUGGUCGAUUGGAA -21
Get sequence
|
|---|
| Star sequence |
Sne-Novel-1_3p* |
| mirBase accession | None |
|---|
| Sequence |
109- UCUAAUCAGCUCUUGUCAAUUG -131
Get sequence
|
|---|
