| MirGeneDB ID | Sme-Mir-87-o9 |
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| Family name |
MIR-87 (all species) |
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| Species |
Freshwater planarian (Schmidtea mediterranea) |
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| MiRBase ID |
sme-mir-87b
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| Paralogues |
Sme-Mir-87-o8
Sme-Mir-87-o10
Sme-Mir-87-o11
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| Orthologues |
Gsp-Mir-87
Sne-Mir-87
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| Node of Origin (locus) |
S. mediterranea
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| Node of Origin (family) |
Protostomia
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Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000183_dd_Smes_g4_183: 1003279-1003349 [+]
UCSC
Ensembl
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| Seed |
UGAGCAA |
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Precursor
(pre-Mir +30nt flank) |
UUUAUUCAGUUUCAUUGAUGCGUUGAUGCUUCAUUCGAAAUUUUGCUCAAAUCCAUUUUGUUAAUAAUAAUUUUCGAUGGUGAGCAAAGCUUCAAAUGAGAUUUCACGGAAUUCGGUCUUCAUUGUUAUUA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UUUAUUCAGUUUCAUUGAUG---| U UGC C A AAU UUUUGUUAAU
CGU GA UUCAUU GAA UUUUGCUCA CCA A
GCA CU GAGUAA CUU GAAACGAGU GGU A
AUUAUUGUUACUUCUGGCUUAAG^ - UUA A C --- AGCUUUUAAU
. 120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| Comment | There is a second Drosha cut +1 on both arms. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Ag |
Ag |
Di |
Gf |
Ne |
Ph |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Wh |
Wh |
Wh |
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| Star sequence |
Sme-Mir-87-o9_5p* |
| mirBase accession | MIMAT0012110 |
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| Sequence |
0- UCAUUCGAAAUUUUGCUCAAAUCCA -25
Get sequence
|
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| Mature sequence |
Sme-Mir-87-o9_3p |
| mirBase accession | MIMAT0003990 |
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| Sequence |
49- GUGAGCAAAGCUUCAAAUGAGA -71
Get sequence
|
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