| MirGeneDB ID | Sme-Mir-2170 |
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| Family name |
MIR-2170 (all species) |
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| Species |
Freshwater planarian (Schmidtea mediterranea) |
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| MiRBase ID |
sme-mir-2170
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
S. mediterranea
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| Node of Origin (family) |
S. mediterranea
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Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000070_dd_Smes_g4_70: 1655528-1655584 [-]
UCSC
Ensembl
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| Seed |
CAGUGAA |
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Precursor
(pre-Mir +30nt flank) |
CUCUGAUUUCUUAUAAAUGGCAUUAUAUUUUCUCUACUAAAUUUCACUAUGAAUUUAAGGUAUUCACAGUGAAAUUUUGUAGAGAAAAUAUAAUAAAUUGCUUGUAAGCUUCUCUAG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CUCUGAUUUCUUAUAAAUGGC--| U A AUUUA
AUUAUAUUUUCUCUAC AAAUUUCACU UGA \
UAAUAUAAAAGAGAUG UUUAAAGUGA ACU A
GAUCUCUUCGAAUGUUCGUUAAA^ U C UAUGG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Ag |
Ag |
Di |
Gf |
Ne |
Ph |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Wh |
Wh |
Wh |
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| Star sequence |
Sme-Mir-2170_5p* |
| mirBase accession | None |
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| Sequence |
0- UCUCUACUAAAUUUCACUAUGA -22
Get sequence
|
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| Mature sequence |
Sme-Mir-2170_3p |
| mirBase accession | MIMAT0011269 |
|---|
| Sequence |
35- ACAGUGAAAUUUUGUAGAGAAA -57
Get sequence
|
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