MirGeneDB 2.1

MirGeneDB ID

Sme-Mir-2170

Family name MIR-2170 (all species)
Seed CUCUACU
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-2170
Paralogues
Orthologues
Node of Origin (locus) S. mediterranea
Node of Origin (family) S. mediterranea
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)
NNSW01000070_dd_Smes_g4_70: 1655528-1655584 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCUGAUUUCUUAUAAAUGGCAUUAUAUUUUCUCUACUAAAUUUCACUAUGAAUUUAAGGUAUUCACAGUGAAAUUUUGUAGAGAAAAUAUAAUAAAUUGCUUGUAAGCUUCUCUAG
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Structure
        10        20          30        40        50        
CUCUGAUUUCUUAUAAAUGGC--|               U          A   AUUUA 
                       AUUAUAUUUUCUCUAC AAAUUUCACU UGA     \
                       UAAUAUAAAAGAGAUG UUUAAAGUGA ACU     A
GAUCUCUUCGAAUGUUCGUUAAA^               U          C   UAUGG 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Se Se Se Se Se Se Se Se Se Se Se Se Ne Wh Wh Wh
Mature sequence

Sme-Mir-2170_5p

mirBase accessionNone
Sequence
0- UCUCUACUAAAUUUCACUAUGA -22
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Co-mature sequence

Sme-Mir-2170_3p

mirBase accessionMIMAT0011269
Sequence
35- ACAGUGAAAUUUUGUAGAGAAA -57
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