| MirGeneDB ID | Sme-Mir-2169 |
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| Family name |
MIR-2169 (all species) |
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| Species |
Freshwater planarian (Schmidtea mediterranea) |
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| MiRBase ID |
sme-mir-2169
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
S. mediterranea
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| Node of Origin (family) |
S. mediterranea
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Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000073_dd_Smes_g4_73: 1419130-1419183 [+]
UCSC
Ensembl
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| Seed |
ACUUUGA |
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Precursor
(pre-Mir +30nt flank) |
AUUUUAAGCAGAAUUUUUUAUCACUCUAACAACUUUGAAAUUCGAUCUGAUAUAAAAUAUUAUAAGCUCGAUAUUUAAAGUGGUUUUCGUGAUAUUUUUCGUCCCUUUUAUAAU
Get precursor sequence
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| Structure | 10 20 30 40 50
AUUUUAAGCAGAAUUUUU--| UCU A AU U G UAA
UAUCAC AAC ACUUUGAA UCGA CU AUA A
AUAGUG UUG UGAAAUUU AGCU GA UAU A
UAAUAUUUUCCCUGCUUUUU^ CUU G AU C A UAU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Ag |
Ag |
Di |
Gf |
Ne |
Ph |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Wh |
Wh |
Wh |
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| Mature sequence |
Sme-Mir-2169_5p |
| mirBase accession | MIMAT0011267 |
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| Sequence |
0- AACUUUGAAAUUCGAUCUGAUA -22
Get sequence
|
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| Star sequence |
Sme-Mir-2169_3p* |
| mirBase accession | MIMAT0012161 |
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| Sequence |
32- UAAGCUCGAUAUUUAAAGUGGU -54
Get sequence
|
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