MirGeneDB 2.1

MirGeneDB ID

Sme-Mir-2165

Family name MIR-2165 (all species)
Seed AAUUCGA
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-2165
Paralogues
Orthologues
Node of Origin (locus) S. mediterranea
Node of Origin (family) S. mediterranea
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)
NNSW01000069_dd_Smes_g4_69: 1193079-1193150 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUUUGAAUAUAAACUUUAUAUGAAUCCGAUCAUUCUACAGGAUCGAAUCAGUUUGUAAAUUUGUAAACUAUCUCUUCAACUAAUUCGAUUCUUUAGAGUAUUUGAUUUCAUUUUAUUCCUCGUAAUAAUAAU
Get precursor sequence
Structure
        10          20        30        40        50        60     
AUUUGAAUAUAAACUUUAU--|    UC   UC      C          C   UUGUAAAUUUGU 
                     AUGAA  CGA  AUUCUA AGGAUCGAAU AGU            A
                     UACUU  GUU  UGAGAU UCUUAGCUUA UCA            A
UAAUAAUAAUGCUCCUUAUUU^    UA   UA      U          A   ACUUCUCUAUCA 
130       120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Se Se Se Se Se Se Se Se Se Se Se Se Ne Wh Wh Wh
Star sequence

Sme-Mir-2165_5p*

mirBase accessionMIMAT0012157
Sequence
0- CAUUCUACAGGAUCGAAUCAGU -22
Get sequence
Mature sequence

Sme-Mir-2165_3p

mirBase accessionMIMAT0011260
Sequence
50- UAAUUCGAUUCUUUAGAGUAUU -72
Get sequence