| MirGeneDB ID | Sme-Mir-2156 |
|---|
| Family name |
MIR-2156 (all species) |
|---|
| Seed |
CUUACGG |
|---|
| Species |
Freshwater planarian (Schmidtea mediterranea) |
|---|
| MiRBase ID |
sme-mir-2156b
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
S. mediterranea
|
|---|
| Node of Origin (family) |
S. mediterranea
|
|---|
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000056_dd_Smes_g4_56: 2430589-2430645 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CGUUAAUUCAAAGUUUUUUCAUAACUGAAAAAGGUUUUUGAGCCGUAAAUCAAAAUAAUAUUUGCCUUACGGCCCCUAAACCUUAUUUCUGAAAUGAAUGUUCAUCCUUUUUCGGAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CGUUAAUUCAAAGUUUU-- AACU -| UUGA AU AAAU
UUCAU GAAA AAGGUUU GCCGUAA CA A
AAGUA CUUU UUCCAAA CGGCAUU GU A
AAGGCUUUUUCCUACUUGU AAGU A^ UCCC CC UUAU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Ne |
Wh |
Wh |
Wh |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Sme-Mir-2156_5p* |
| mirBase accession | MIMAT0011393 |
|---|
| Sequence |
0- AAGGUUUUUGAGCCGUAAAUCA -22
Get sequence
|
|---|
| Mature sequence |
Sme-Mir-2156_3p |
| mirBase accession | MIMAT0011394 |
|---|
| Sequence |
34- CCUUACGGCCCCUAAACCUUAUU -57
Get sequence
|
|---|
