MirGeneDB 2.1
MirGeneDB ID

Sme-Mir-190-P21

Family name MIR-190 (all species)
Seed GAUAUGU
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-190b
Paralogues Sme-Mir-190-P20  Sme-Mir-190-P22 
Orthologues Aae-Mir-190  Asu-Mir-190  Bfl-Mir-190  Bge-Mir-190  Bla-Mir-190  Bpl-Mir-190  Cbr-Mir-190  Cel-Mir-190  Cgi-Mir-190  Cte-Mir-190  Dan-Mir-190  Dma-Mir-190  Dme-Mir-190  Dmo-Mir-190  Dpu-Mir-190  Dsi-Mir-190  Dya-Mir-190  Esc-Mir-190  Hme-Mir-190  Isc-Mir-190  Npo-Mir-190  Obi-Mir-190  Ovu-Mir-190  Pfl-Mir-190  Pmi-Mir-190  Sko-Mir-190  Tca-Mir-190  Xbo-Mir-190 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Bilateria
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000083_dd_Smes_g4_83: 666744-666807 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUAAUAAAUAUUAAAAUGCACUUCAAAUCGUGAUAUGUUUGGUUUAUUGGUGAGUGUAAACUGAUUUCUAACACCAUUAGCCUAAUGUAUCGUGUCAUUGAGUGCUGAACUUCGUUUUUAUAAU
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Structure
        10          20         30        40        50        60  
AUAAUAAAUAUUAAAAU--|    U   AU-           U    UAU     AGUGUAAAC 
                   GCACU CAA   CGUGAUAUGUU GGUU   UGGUG         \
                   CGUGA GUU   GUGCUAUGUAA CCGA   ACCAC         U
UAAUAUUUUUGCUUCAAGU^    -   ACU           U    UU-     AAUCUUUAG 
  120       110        100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Se Se Se Se Se Se Se Se Se Se Se Se Ne Wh Wh Wh
Mature sequence

Sme-Mir-190-P21_5p
mirBase accessionMIMAT0004003
Sequence 
0- UGAUAUGUUUGGUUUAUUGGUGA -23
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Star sequence

Sme-Mir-190-P21_3p*
mirBase accessionMIMAT0004004
Sequence 
42- ACCAUUAGCCUAAUGUAUCGUG -64
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