Mir-190-P21

MirGeneDB ID

Sme-Mir-190-P21

Family name

MIR-190 (all species)

Species

Freshwater planarian (Schmidtea mediterranea)

MiRBase ID

sme-mir-190b

Paralogues

Sme-Mir-190-P19 Sme-Mir-190-P20

Orthologues

Aae-Mir-190 Aga-Mir-190 Agr-Mir-190 Asu-Mir-190 Bfl-Mir-190 Bge-Mir-190 Bko-Mir-190 Bla-Mir-190 Bpl-Mir-190 Cbr-Mir-190 Cel-Mir-190 Cte-Mir-190 Dan-Mir-190 Dlo-Mir-190 Dma-Mir-190 Dme-Mir-190 Dmo-Mir-190 Dpu-Mir-190 Dsi-Mir-190 Dya-Mir-190 Eba-Mir-190 Egr-Mir-190 Esc-Mir-190 Gpa-Mir-190 Gsa-Mir-190 Hme-Mir-190 Hmi-Mir-190 Hru-Mir-190 Isc-Mir-190 Mgi-Mir-190 Mom-Mir-190 Npo-Mir-190 Obi-Mir-190 Ofu-Mir-190 Ovu-Mir-190 Pau-Mir-190 Pca-Mir-190 Pdu-Mir-190 Pfl-Mir-190 Pmi-Mir-190 Pve-Mir-190 Rph-Mir-190 Sko-Mir-190 Sma-Mir-190 Snu-Mir-190 Tca-Mir-190 Tur-Mir-190 War-Mir-190 Xbo-Mir-190

Node of Origin (locus)

S. mediterranea

Node of Origin (family)

Bilateria

Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)

NNSW01000083_dd_Smes_g4_83: 666744-666807 [-] UCSC Ensembl

Seed

GAUAUGU

Precursor
(pre-Mir +30nt flank)

AUAAUAAAUAUUAAAAUGCACUUCAAAUCGUGAUAUGUUUGGUUUAUUGGUGAGUGUAAACUGAUUUCUAACACCAUUAGCCUAAUGUAUCGUGUCAUUGAGUGCUGAACUUCGUUUUUAUAAU

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Structure

        10          20         30        40        50        60  
AUAAUAAAUAUUAAAAU--|    U   AU-           U    UAU     AGUGUAAAC 
                   GCACU CAA   CGUGAUAUGUU GGUU   UGGUG         \
                   CGUGA GUU   GUGCUAUGUAA CCGA   ACCAC         U
UAAUAUUUUUGCUUCAAGU^    -   ACU           U    UU-     AAUCUUUAG 
  120       110        100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Ag	Ag	Di	Gf	Ne	Ph	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Wh	Wh	Wh

Mature sequence

Sme-Mir-190-P21_5p

mirBase accession

MIMAT0004003

Sequence

0- UGAUAUGUUUGGUUUAUUGGUGA -23

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Star sequence

Sme-Mir-190-P21_3p*

mirBase accession

MIMAT0004004

Sequence

42- ACCAUUAGCCUAAUGUAUCGUG -64

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