MirGeneDB 3.0

MirGeneDB ID

Sha-Mir-1547

Family name MIR-1547 (all species)
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues
Orthologues Mdo-Mir-1547  Neu-Mir-1547 
Node of Origin (locus) Marsupialia
Node of Origin (family) Marsupialia
Genome context
(DEVIL_add)
GL849719.1: 3577129-3577189 [-] UCSC Ensembl
Seed AUCAGAG
Precursor
(pre-Mir +30nt flank)
CCACCCCUACUUGAUACAGAACGUAUGAUGUAUCAGAGUCUUGGGUCCUUGUGUAGAUGCUUUGAGACUUCAAGGAUCCCUGACUUGAUCAUUGUGGGUUCUCCCUUCACCGAUGCAACUC
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Structure
        10          20        30        40        50         60
CCACCCCUACUUGAUAC--|    G  UG   U    G    UU         U-  AGAUG 
                   AGAAC UA  AUG AUCA AGUC  GGGUCCUUG  GU     C
                   UCUUG GU  UAC UAGU UCAG  CCUAGGAAC  CA     U
CUCAACGUAGCCACUUCCC^    G  GU   -    -    UC         UU  GAGUU 
 .       110       100        90          80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-1547_5p

mirBase accessionNone
Sequence
0- UAUCAGAGUCUUGGGUCCUUGUGU -24
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Star sequence

Sha-Mir-1547_3p*

mirBase accessionNone
Sequence
39- UCAAGGAUCCCUGACUUGAUCA -61
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