| MirGeneDB ID | Sha-Mir-12469 |
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| Family name |
MIR-12469 (all species) |
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| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Neu-Mir-12469
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| Node of Origin (locus) |
Marsupialia
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| Node of Origin (family) |
Marsupialia
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Genome context
(DEVIL_add) |
GL857025.1: 661380-661436 [-]
UCSC
Ensembl
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| Seed |
ACUCACA |
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Precursor
(pre-Mir +30nt flank) |
GAAGACUGAAUUCCAGUAACUGGAACAGUUAACUCACAUUAGGCAACCUGCUUCAGCUCGCCCAGCAAGUUGGCUAAUGUGAGUUCACUGAUCCGGUUUCCUCCUCUGUGGAAGAGA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GAAGACUGAAUUCCAGU--| A U G C UCAGC
AACUGGA CAGU AACUCACAUUAG CAAC UGCU \
UUGGCCU GUCA UUGAGUGUAAUC GUUG ACGA U
AGAGAAGGUGUCUCCUCCU^ A C G A CCCGC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | Although apparently lost in Monodelphis the gene is present in other Didelphids. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Mature sequence |
Sha-Mir-12469_5p |
| mirBase accession | None |
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| Sequence |
0- AACUCACAUUAGGCAACCUGCU -22
Get sequence
|
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| Co-mature sequence |
Sha-Mir-12469_3p |
| mirBase accession | None |
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| Sequence |
35- CAAGUUGGCUAAUGUGAGUUCA -57
Get sequence
|
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