| MirGeneDB ID | Sha-Mir-12404 |
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| Family name |
MIR-12404 (all species) |
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| Seed |
GGUGAAG |
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| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Mdo-Mir-12404
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| Node of Origin (locus) |
Marsupialia
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| Node of Origin (family) |
Marsupialia
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Genome context
(DEVIL_add) |
GL867612.1: 601581-601639 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CUUACCAGAGGCUCCUUCUGAGGCCUACGGAGGUGAAGUGACUUGCCAAGGUUGUUCAUGUGUUAUCUUAAGCAAGUCCCUUCCCCUCUCUACCCUCAGUAUUCUCUUCCAUAAAUUGA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CUUACCAGAGGCUCCUU---| CCUAC U U C- UGUUC
CUGAGG GGAGG GAAG GACUUGC AAGGU A
GACUCC UCUCC CUUC CUGAACG UUCUA U
AGUUAAAUACCUUCUCUUAU^ CAUC- C C AA UUGUG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Mature sequence |
Sha-Mir-12404_5p |
| mirBase accession | None |
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| Sequence |
0- AGGUGAAGUGACUUGCCAAGGU -22
Get sequence
|
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| Star sequence |
Sha-Mir-12404_3p* |
| mirBase accession | None |
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| Sequence |
36- CUUAAGCAAGUCCCUUCCCCUCU -59
Get sequence
|
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