| MirGeneDB ID | Pve-Novel-2 |
|---|
| Family name |
PVE-NOVEL-2 (all species) |
|---|
| Species |
Vernerds tusk shell (Pictodentalium vernedei) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
Dentaliidae
|
|---|
| Node of Origin (family) |
Dentaliidae
|
|---|
Genome context
(Pve_genome_chr_only) |
Pve_Chr1: 273121884-273121943 [+]
Ensembl
|
|---|
| Seed |
UUGCUCA |
|---|
Precursor
(pre-Mir +30nt flank) |
UUGCAAGGAAGAGAAGAGCUUCCUCACGGUUUUGCUCAGACUUCAGACAAUCAGAAGAGAAGUCACCUGGUGUCGUUGUCUGAGUCAACCUGUGAGUCGCAUAGCAUCAACGAGUCUACG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UUGCAAGGAAGAGAAGA---| UUC U U UUCA A AGAAGAG
GC CUCACGG UU GCUCAGAC GACA UC A
CG GAGUGUC AA UGAGUCUG CUGU GG A
GCAUCUGAGCAACUACGAUA^ CU- C C UUG- - UCCACUG
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Pve-Novel-2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UUUGCUCAGACUUCAGACAAUC -22
Get sequence
|
|---|
| Star sequence |
Pve-Novel-2_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- GGUGUCGUUGUCUGAGUCAACC -60
Get sequence
|
|---|
