| MirGeneDB ID | Pve-Novel-1 |
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| Family name |
PVE-NOVEL-1 (all species) |
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| Species |
Vernerds tusk shell (Pictodentalium vernedei) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
Dentaliidae
|
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| Node of Origin (family) |
Dentaliidae
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Genome context
(Pve_genome_chr_only) |
Pve_Chr1: 206768351-206768409 [+]
Ensembl
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| Seed |
GAGGUAG |
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Precursor
(pre-Mir +30nt flank) |
UGUCUGUUAUAUUUCAGCUCUUGUGUAAGGUGAGGUAGUUUUCAAUUCGCUCAGAAUAGUAAAAUAGGCGGAUACAAGACUACCUCGCUCUACGCAGAGCAUUCUCUGCGACAGACUGU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UGUCUGUUAUAUUUCAG---| U AG CA CAGAAUA
CUCU GUGUA GUGAGGUAGUUUU AUUCGCU \
GAGA CGCAU CGCUCCAUCAGAA UAGGCGG G
UGUCAGACAGCGUCUCUUAC^ - CU CA AUAAAAU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut +1 on both arms. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Pve-Novel-1_5p |
| mirBase accession | None |
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| Sequence |
0- UGAGGUAGUUUUCAAUUCGCU -21
Get sequence
|
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| Star sequence |
Pve-Novel-1_3p* |
| mirBase accession | None |
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| Sequence |
38- CGGAUACAAGACUACCUCGCU -59
Get sequence
|
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