| MirGeneDB ID | Pma-Mir-4571 |
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| Family name |
MIR-4571 (all species) |
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| Species |
Sea Lamprey (Petromyzon marinus) |
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| MiRBase ID |
pma-mir-4571
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
P. marinus
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| Node of Origin (family) |
P. marinus
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Genome context
(GCF_010993605.1_kPetMar1.pri_genomic) |
NC_046084.1: 7079058-7079119 [-]
UCSC
Ensembl
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| Seed |
GUGUGUG |
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Precursor
(pre-Mir +30nt flank) |
ACAUAUAGGACACAUGACCUGUGCGUGUAUAUGGAAUAUAUGUACACACAGGAUAUUACAUAAUCUACGUGUGUGUGCAGUAUAUUACAUUUAUGAGCUACAGUACUAUAUAGUGUCAAUAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
ACAUAUAGGACACAUGAC- - GU U G -| GGAUAUUAC
CUGU GC GUA AUG AAUAUA UGUACACACA \
GACA CG UAU UAC UUAUAU ACGUGUGUGU A
UAUAACUGUGAUAUAUCAU U AG U A G^ GCAUCUAAU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
Yes
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| Motifs | No |
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Tissue expression
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| Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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| Star sequence |
Pma-Mir-4571_5p* |
| mirBase accession | MIMAT0019603 |
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| Sequence |
0- AUGGAAUAUAUGUACACACAGG -22
Get sequence
|
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| Mature sequence |
Pma-Mir-4571_3p |
| mirBase accession | MIMAT0019604 |
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| Sequence |
39- UGUGUGUGCAGUAUAUUACAUUU -62
Get sequence
|
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