| MirGeneDB ID | Pma-Mir-430-o35 |
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| Family name |
MIR-430 (all species) |
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| Species |
Sea Lamprey (Petromyzon marinus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Hsa-Mir-430-P35
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| Node of Origin (locus) |
P. marinus
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| Node of Origin (family) |
Vertebrata
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Genome context
(GCF_010993605.1_kPetMar1.pri_genomic) |
NC_046076.1: 2418146-2418209 [-]
UCSC
Ensembl
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| Seed |
AAGUGCU |
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Precursor
(pre-Mir +30nt flank) |
CCCCCGUCGCCGCUAGUCCUCGCCACUGCUACCCAGAUAGCAGUACUUGCUGUUAGAAUUAUGAGCCGCAGUAAGUGCUUACCUGUUUGGGCAUCAGCGGUAGAGGAAUUCCGUCGCAUAAGAU
Get precursor sequence
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| Structure | 10 20 30 40 50 60
CCCCCGUCGCCGCUAGU- - A CUA C--| GUUAGAAU
CCUC GCC CUG CCCAGAUAG AGUACUUGCU U
GGAG UGG GAC GGGUUUGUC UCGUGAAUGA A
UAGAAUACGCUGCCUUAA A C UAC CAU^ CGCCGAGU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| Comment | There are likely hundreds of copies of Mir-430 genes in the lamprey genome but without deep reads of larval stages it is not possible to annotate them. Therefore only single and unique Mir-430 gene is currently annotated in P. marinus. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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| Star sequence |
Pma-Mir-430-o35_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- ACCCAGAUAGCAGUACUUGCU -21
Get sequence
|
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| Mature sequence |
Pma-Mir-430-o35_3p |
| mirBase accession | None |
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| Sequence |
41- UAAGUGCUUACCUGUUUGGGCAU -64
Get sequence
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