| MirGeneDB ID | Pfl-Mir-2008 |
|---|
| Family name |
MIR-2008 (all species) |
|---|
| Species |
Ptychodera (Ptychodera flava) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Pmi-Mir-2008
Sko-Mir-2008-v1
Spu-Mir-2008
|
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| Node of Origin (locus) |
Ambulacraria
|
|---|
| Node of Origin (family) |
Ambulacraria
|
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Genome context
(Pfl) |
LD526296.1: 136777-136837 [-]
|
|---|
| Seed |
CAGCCUC |
|---|
Precursor
(pre-Mir +30nt flank) |
GUAUGUACGUUGUAGCUUCAUUUUUUACCCCGUAUUAACACUGAGGUUGAUGUUCGAUUUGUGAUACCAUCAGCCUCGCUGUCAAUACGGCGUAAGGGAUGGUAUUCGUCACGCCUCCUGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUAUGUACGUUGUAGCU--| C A C UUCGAUU
UCAUUUUUUAC CCGUAUU ACA UGAGGUUGAUG \
GGUAGGGAAUG GGCAUAA UGU GCUCCGACUAC U
UGUCCUCCGCACUGCUUAU^ C C C CAUAGUG
. 110 100 90 80 70 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Pfl-Mir-2008_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- CGUAUUAACACUGAGGUUGAUG -22
Get sequence
|
|---|
| Mature sequence |
Pfl-Mir-2008_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
39- UCAGCCUCGCUGUCAAUACGGC -61
Get sequence
|
|---|
