| MirGeneDB ID | Pca-Novel-4 |
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| Family name |
PCA-NOVEL-4 (all species) |
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| Species |
Penis worm (Priapulus caudatus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
P. caudatus
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| Node of Origin (family) |
P. caudatus
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Genome context
(Priapulus_caudatus_gca000485595v2) |
KQ715038.1: 626891-626950 [+]
UCSC
Ensembl
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| Seed |
UGGCGUU |
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Precursor
(pre-Mir +30nt flank) |
GAAGCGCACUCGUGACAGGCACUGAAGUCUGACAAGACGCGCAACUGCCACAAUCGAUAUUUGAGUUAUGGCGUUACGCCGUGUUGUCAGAGUAGAGGGUGCGCGACCGACGGAAAUGUG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GAAGCGCACUCGUGACAG GAAG-- G -| C U C UCGAU
GCACU UCUGACAA AC GCG AAC GCCA AA A
CGUGG AGACUGUU UG CGC UUG CGGU UU U
GUGUAAAGGCAGCCAGCG GAGAUG G C^ A - A GAGUU
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Pca-Novel-4_5p* |
| mirBase accession | None |
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| Sequence |
0- GACAAGACGCGCAACUGCCACAA -23
Get sequence
|
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| Mature sequence |
Pca-Novel-4_3p |
| mirBase accession | None |
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| Sequence |
37- AUGGCGUUACGCCGUGUUGUCAG -60
Get sequence
|
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