| MirGeneDB ID | Pca-Novel-2 |
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| Family name |
PCA-NOVEL-2 (all species) |
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| Species |
Penis worm (Priapulus caudatus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
P. caudatus
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| Node of Origin (family) |
P. caudatus
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Genome context
(Priapulus_caudatus_gca000485595v2) |
KQ715891.1: 63716-63775 [-]
UCSC
Ensembl
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| Seed |
CUAGCAU |
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Precursor
(pre-Mir +30nt flank) |
AACACGUGGCGUCCCCUGUAGGCGUAGGGCAGGGUAAUCUUGAUGCUAUGAGCUCGGCUUGCAAGGCUCUAGCAUUAGGAUUGGCUCCGUCCUGCCACGUGACAAUCUUCACAUAUUUGA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AACACGUGGCGUCCCCU-----| A GU A - U UCGGC
GU GGC AGGGC GGGU AAUCUUGAUGCUA GAGC U
CA CCG UCCUG CUCG UUAGGAUUACGAU CUCG U
AGUUUAUACACUUCUAACAGUG^ - -- C G - GAACG
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Pca-Novel-2_5p* |
| mirBase accession | None |
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| Sequence |
0- AGGGUAAUCUUGAUGCUAUGAGC -23
Get sequence
|
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| Mature sequence |
Pca-Novel-2_3p |
| mirBase accession | None |
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| Sequence |
37- UCUAGCAUUAGGAUUGGCUCCGU -60
Get sequence
|
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