| MirGeneDB ID | Pab-Mir-486 |
|---|
| Family name |
MIR-486 (all species) |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Bta-Mir-486
Cfa-Mir-486
Cja-Mir-486
Cpo-Mir-486
Dno-Mir-486
Eca-Mir-486
Ete-Mir-486
Hsa-Mir-486
Laf-Mir-486
Mml-Mir-486
Mml-Mir-486-as
Mmr-Mir-486
Mmu-Mir-486
Ocu-Mir-486
Rno-Mir-486
|
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054686.2: 43716097-43716160 [+]
UCSC
Ensembl
|
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| Seed |
CCUGUAC |
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Precursor
(pre-Mir +30nt flank) |
UCACCUCUUGCUGACUCCCACCCCGAGGUAUCCUGUACUGAGCUGCCCCGAGCUGGGCAGCAUGAAGGGCCUCGGGGCAGCUCAGUACAGGAUGCCCCAGGGAGGAUGGAGAUCAGAGCUGGCC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UCACCUCUUGCUGACUC--| A CGA CUGGGCAG
CC CCC GGUAUCCUGUACUGAGCUGCCCCGAG C
GG GGG CCGUAGGACAUGACUCGACGGGGCUC A
CCGGUCGAGACUAGAGGUA^ A ACC CGGGAAGU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| Comment | Mir-486 is palindromic. This orientation is 5'-3' with respect to the host gene, as well as rabbit and cow where the mature and star sequences differ. |
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Mature sequence |
Pab-Mir-486_5p |
| mirBase accession | None |
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| Sequence |
0- UCCUGUACUGAGCUGCCCCGAG -22
Get sequence
|
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| Star sequence |
Pab-Mir-486_3p* |
| mirBase accession | None |
|---|
| Sequence |
42- CGGGGCAGCUCAGUACAGGAUG -64
Get sequence
|
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