| MirGeneDB ID | Ovu-Novel-16-v1 |
|---|
| Family name |
COL-NOVEL-16 (all species) |
|---|
| Seed |
UCCGAUU |
|---|
| Species |
Common octopus (Octopus vulgaris) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Ovu-Novel-16-v2
|
|---|
| Orthologues |
Esc-Novel-16
Obi-Novel-16-v1
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01013033.1: 23748-23804 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
ACAGAUGAACGCAUCUCACGGGUCAACACGUUCCGAUUGUUCUAAGUCCGGCUCUUAGUUAAAAGCCGGACUUGAAAAAUCGGAGUGUGUGAGCCGAUUCAGACACGAGACGAACAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
ACAGAUGAACGCAUCUCA---| G A G U CUUA
CGG UCA CACGUUCCGAUU UUC AAGUCCGGCU G
GCC AGU GUGUGAGGCUAA AAG UUCAGGCCGA U
GACAAGCAGAGCACAGACUUA^ G - A - AAAU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Ovu-Novel-16-v1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UUCCGAUUGUUCUAAGUCCGGCU -23
Get sequence
|
|---|
| Star sequence |
Ovu-Novel-16-v1_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- CCGGACUUGAAAAAUCGGAGUG -57
Get sequence
|
|---|
