MirGeneDB ID | Ovu-Novel-1 |
Family name |
CEP-NOVEL-1 (all species) |
Seed |
GGGGAUG |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
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Orthologues |
Esc-Novel-1
Npo-Novel-1
Obi-Novel-1
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Node of Origin (locus) |
Cephalopoda
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Node of Origin (family) |
Cephalopoda
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01016389.1: 512059-512119 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
CAAGGGAUCUACAGACACUUGACUAGGUAAUGCCCUUCACAGGUAUCUCCUGGAUUUGAACUGAAACCUGGGGAUGCUGUGAAUGGUUCUUACCUGGUUAGGAUUACGUCGAAACUGUUUA
Get precursor sequence
|
Structure | 10 20 30 40 50
CAAGGGAUCUACAGACA-- U-| C G U AUUUGA
CUUGACUAGGUAA GCC UUCACAG UAUCUCC GG \
GGAUUGGUCCAUU UGG AAGUGUC GUAGGGG CC A
AUUUGUCAAAGCUGCAUUA CU^ U - U AAAGUC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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Star sequence |
Ovu-Novel-1_5p* |
mirBase accession | None |
Sequence |
0- UGCCCUUCACAGGUAUCUCCUGG -23
Get sequence
|
Mature sequence |
Ovu-Novel-1_3p |
mirBase accession | None |
Sequence |
38- UGGGGAUGCUGUGAAUGGUUCUU -61
Get sequence
|