| MirGeneDB ID | Obi-Mir-12570 |
|---|
| Family name |
MIR-12570 (all species) |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Ovu-Mir-12570
|
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| Node of Origin (locus) |
Octopus
|
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| Node of Origin (family) |
Octopus
|
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Genome context
(PRJNA270931_OBI) |
KQ415671: 60207-60265 [+]
Ensembl
|
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| Seed |
UAUAAUU |
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Precursor
(pre-Mir +30nt flank) |
GGUGUCCUUAACAACAUGGCCGUUAUUAUUCUAAGUACCUAGUUUUGUAAUGUGUACACUUCUGGCAUUAUAAUUCUACGUACCUGGGGUUAUAACGAUGUCUACUAACAUUCUCUAUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGUGUCCUUAACAACAUGGC--| U A C UU UGUACA
CGUUAU AUUCUA GUAC UAG UUGUAAUG \
GCAAUA UGGGGU CAUG AUC AAUAUUAC C
UUAUCUCUUACAAUCAUCUGUA^ U C C UU GGUCUU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Obi-Mir-12570_5p* |
| mirBase accession | None |
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| Sequence |
0- CUAAGUACCUAGUUUUGUAAUG -22
Get sequence
|
|---|
| Mature sequence |
Obi-Mir-12570_3p |
| mirBase accession | None |
|---|
| Sequence |
37- UUAUAAUUCUACGUACCUGGGG -59
Get sequence
|
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