| MirGeneDB ID | Obi-Mir-12563 |
|---|
| Family name |
MIR-12563 (all species) |
|---|
| Species |
California two-spot octopus (Octopus bimaculoides) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Ovu-Mir-12563
|
|---|
| Node of Origin (locus) |
Octopus
|
|---|
| Node of Origin (family) |
Octopus
|
|---|
Genome context
(PRJNA270931_OBI) |
KQ419823: 190792-190844 [-]
Ensembl
|
|---|
| Seed |
CAAUUUC |
|---|
Precursor
(pre-Mir +30nt flank) |
AUCCAUCCACUGAUUUGACAAAAAAGGUCUCACUCCUACUUCAAGGUUGGAUGUUUACUAUUCAAUUUCAAAGCAGGAGUGGUACCUUUUUGUCACCAGCUUCAAGAAUUUAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUCCAUCCACUGAUUUG---| A CU A CA GUU
ACAAAAA GGU CACUCCU CUU AGGUUGGAU \
UGUUUUU CCA GUGAGGA GAA UUUAACUUA U
UAUUUAAGAACUUCGACCAC^ - UG C AC UCA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Obi-Mir-12563_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CACUCCUACUUCAAGGUUGGAU -22
Get sequence
|
|---|
| Mature sequence |
Obi-Mir-12563_3p |
| mirBase accession | None |
|---|
| Sequence |
31- UCAAUUUCAAAGCAGGAGUGGU -53
Get sequence
|
|---|
