| MirGeneDB ID | Obi-Mir-12560 |
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| Family name |
MIR-12560 (all species) |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Ovu-Mir-12560
|
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| Node of Origin (locus) |
Octopus
|
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| Node of Origin (family) |
Octopus
|
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Genome context
(PRJNA270931_OBI) |
KQ416359: 780011-780069 [+]
Ensembl
|
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| Seed |
GAGAAAA |
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Precursor
(pre-Mir +30nt flank) |
CUUCUCCGGUCGCAUCAGCCCGACGUCGAGAGAGAAAAGUUAAAGUCUUUGGUUCCUGUCCUCAUCAAACACUUCAACCUUUCUCCUCUCGAUGGCGAUCUACAACAUCCUACCGAAAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUUCUCCGGUCGCAUCAGCC-- A -| A A C UUCCU
CG CGUCGAGA GAGAAA GUU AAGU UUUGG G
GC GUAGCUCU CUCUUU CAA UUCA AAACU U
UAAAGCCAUCCUACAACAUCUA G C^ C C C ACUCC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Obi-Mir-12560_5p |
| mirBase accession | None |
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| Sequence |
0- AGAGAAAAGUUAAAGUCUUUGG -22
Get sequence
|
|---|
| Star sequence |
Obi-Mir-12560_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- AAACACUUCAACCUUUCUCCUCU -59
Get sequence
|
|---|
