| MirGeneDB ID | Obi-Mir-12557 |
|---|
| Family name |
MIR-12557 (all species) |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Ovu-Mir-12557
|
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| Node of Origin (locus) |
Octopus
|
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| Node of Origin (family) |
Octopus
|
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Genome context
(PRJNA270931_OBI) |
KQ416390: 327922-327985 [-]
Ensembl
|
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| Seed |
UUGGACU |
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Precursor
(pre-Mir +30nt flank) |
UUAAUCGGAUUUGAGAGUGUAGUUAUUGCAUGGGAAAUGUGAAGUUCAAGGAGUAUAUAGUAAGACGUUUCUUUGGACUUCGUCAUUUUCCAUUUUAUAUCUGCUCUGUCAUUGUAACUCUGGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UUAAUCGGAUUUGAGAGU-- U UGC -| GUAUAUAG
GUAG UAU AUGGGAAAUG UGAAGUUCAAGGA \
CGUC AUA UACCUUUUAC GCUUCAGGUUUCU U
GGGUCUCAAUGUUACUGUCU U UUU U^ UUGCAGAA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Obi-Mir-12557_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UGGGAAAUGUGAAGUUCAAGGA -22
Get sequence
|
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| Mature sequence |
Obi-Mir-12557_3p |
| mirBase accession | None |
|---|
| Sequence |
41- UUUGGACUUCGUCAUUUUCCAUU -64
Get sequence
|
|---|
