| MirGeneDB ID | Obi-Mir-12504 |
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| Family name |
MIR-12504 (all species) |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Esc-Mir-12504
Npo-Mir-12504
Ovu-Mir-12504
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| Node of Origin (locus) |
Cephalopoda
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| Node of Origin (family) |
Cephalopoda
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Genome context
(PRJNA270931_OBI) |
KQ419514: 492759-492817 [+]
Ensembl
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| Seed |
UUGCUAU |
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Precursor
(pre-Mir +30nt flank) |
UUCUACGACUUUAUGCUAGUAUGUUUGGCAAUUGCUAUGCGAAUGACUGUUUCAUGAAGACGACAUGACAUUUAUUCGAAUAGCAAUAGUGGAGCAUGCACAUAACAUCAGACAACACA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UUCUACGACUUUAUGCUA--| G A G C UCAUGAA
GUAUGUUU GC AUUGCUAU CGAAUGA UGUU \
CGUACGAG UG UAACGAUA GCUUAUU ACAG G
ACACAACAGACUACAAUACA^ G A A U UACAGCA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Drosha cut +1 on both arms |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
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| Mature sequence |
Obi-Mir-12504_5p |
| mirBase accession | None |
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| Sequence |
0- AUUGCUAUGCGAAUGACUGUUUCA -24
Get sequence
|
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| Star sequence |
Obi-Mir-12504_3p* |
| mirBase accession | None |
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| Sequence |
37- ACAUUUAUUCGAAUAGCAAUAG -59
Get sequence
|
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