MirGeneDB ID | Oan-Mir-1401 |
Family name |
MIR-1401 (all species) |
Species |
Platypus (Ornithorhynchus anatinus) |
MiRBase ID |
oan-mir-1401
|
Paralogues |
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Orthologues |
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Node of Origin (locus) |
O. anatinus
|
Node of Origin (family) |
O. anatinus
|
Genome context (mOrnAna1.p.v1_plustraces) |
NC_041750.1: 23137729-23137791 [+]
|
Seed |
UUCUGAC |
Precursor (pre-Mir +30nt flank) |
CUAGUUCCUGAGGUCAUGCGAGGAUAGCUGUUUCUGACCACCACCGGCCUCUUCCUUCCCAUCAGUGUUAGAGGCCAAUGGCAGUCAGAAAUGGCUCGCCUUGGCUCUCUGCAAGAAACGUGG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CUAGUUCCUGAGGUCAUG--| AU CA CC UCCUUCCC
CGAGG AGCUGUUUCUGAC CCA GGCCUCU \
GUUCC UCGGUAAAGACUG GGU CCGGAGA A
GGUGCAAAGAACGUCUCUCG^ GC AC AA UUGUGACU
120 110 100 90 80 70 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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|
Mature sequence |
Oan-Mir-1401_5p |
mirBase accession | MIMAT0007207 |
Sequence |
0- UUUCUGACCACCACCGGCCUCU -22
Get sequence
|
Star sequence |
Oan-Mir-1401_3p* |
mirBase accession | MIMAT0007208 |
Sequence |
41- AGGCCAAUGGCAGUCAGAAAUG -63
Get sequence
|