MirGeneDB 3.0

MirGeneDB ID

Oan-Mir-1401

Family name MIR-1401 (all species)
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-1401
Paralogues
Orthologues
Node of Origin (locus) O. anatinus
Node of Origin (family) O. anatinus
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041750.1: 23137729-23137791 [+]
Seed UUCUGAC
Precursor
(pre-Mir +30nt flank)
CUAGUUCCUGAGGUCAUGCGAGGAUAGCUGUUUCUGACCACCACCGGCCUCUUCCUUCCCAUCAGUGUUAGAGGCCAAUGGCAGUCAGAAAUGGCUCGCCUUGGCUCUCUGCAAGAAACGUGG
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Structure
        10          20        30        40        50        60 
CUAGUUCCUGAGGUCAUG--|    AU             CA   CC       UCCUUCCC 
                    CGAGG  AGCUGUUUCUGAC  CCA  GGCCUCU        \
                    GUUCC  UCGGUAAAGACUG  GGU  CCGGAGA        A
GGUGCAAAGAACGUCUCUCG^    GC             AC   AA       UUGUGACU 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Br Ce He Ki Te
Mature sequence

Oan-Mir-1401_5p

mirBase accessionMIMAT0007207
Sequence
0- UUUCUGACCACCACCGGCCUCU -22
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Star sequence

Oan-Mir-1401_3p*

mirBase accessionMIMAT0007208
Sequence
41- AGGCCAAUGGCAGUCAGAAAUG -63
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