| MirGeneDB ID | Oan-Mir-1400 |
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| Family name |
MIR-1400 (all species) |
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| Species |
Platypus (Ornithorhynchus anatinus) |
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| MiRBase ID |
oan-mir-1400
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
O. anatinus
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| Node of Origin (family) |
O. anatinus
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Genome context
(mOrnAna1.p.v1_plustraces) |
NC_041750.1: 19507595-19507653 [-]
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| Seed |
AUCCCAC |
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Precursor
(pre-Mir +30nt flank) |
AAUGGCCAAAGACAUGGGCGCAUGAACAGGGAUGGACAGGGUAUGGGAGGAGACUGCAUUCUUCUGCUCAUCCCACUCCAAUCCAUCCAUGUCCCCGUUCCUACACCCCAAACUGGGCA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AAUGGCCAAAGACAUGG----| CAU A G CAG UA G ACUGCA
GCG GA CA GGAUGGA GG UGGGA GAG U
UGC CU GU CCUACCU CC ACCCU CUC U
ACGGGUCAAACCCCACAUCCU^ CC- - A AA- UC A GUCUUC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Oan-Mir-1400_5p* |
| mirBase accession | MIMAT0007205 |
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| Sequence |
0- GAUGGACAGGGUAUGGGAGGAG -22
Get sequence
|
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| Mature sequence |
Oan-Mir-1400_3p |
| mirBase accession | MIMAT0007206 |
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| Sequence |
38- CAUCCCACUCCAAUCCAUCCA -59
Get sequence
|
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