| MirGeneDB ID | Oan-Mir-1338 |
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| Family name |
MIR-1338 (all species) |
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| Species |
Platypus (Ornithorhynchus anatinus) |
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| MiRBase ID |
oan-mir-1338
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
O. anatinus
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| Node of Origin (family) |
O. anatinus
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Genome context
(mOrnAna1.p.v1_plustraces) |
NC_041732.1: 39211982-39212047 [-]
|
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| Seed |
AGGGAGC |
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Precursor
(pre-Mir +30nt flank) |
UGGUGGGCCUCUUUCUAGUUGUUGGGGAUGCAGGGAGCAGACCAGUCCAGUAGAGUUGCCUUCAAUUAAGUUCCCACUGGGCUUGUGCUCACUGUCUCCCUGCUUCUGUAGCCUGUGGGCCACACA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UGGUGGGCCUCUUUCUAGUUGUUGG U - -----| C AGAGUUGCCUU
GGA GCAGGGAG CAG AC AGUCCAGU C
UCU CGUCCCUC GUC UG UCGGGUCA A
ACACACCGGGUGUCCGAUG------ U U ACUCG^ U CCCUUGAAUUA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Mature sequence |
Oan-Mir-1338_5p |
| mirBase accession | MIMAT0006839 |
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| Sequence |
0- CAGGGAGCAGACCAGUCCAGUAGA -24
Get sequence
|
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| Star sequence |
Oan-Mir-1338_3p* |
| mirBase accession | MIMAT0006840 |
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| Sequence |
44- CACUGGGCUUGUGCUCACUGUC -66
Get sequence
|
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