| MirGeneDB ID | Nve-Mir-2050 |
|---|
| Family name |
MIR-2050 (all species) |
|---|
| Seed |
UUUGAUU |
|---|
| Species |
Starlet sea anemone (Nematostella vectensis) |
|---|
| MiRBase ID |
nve-mir-2050
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
N. vectensis
|
|---|
| Node of Origin (family) |
N. vectensis
|
|---|
Genome context
(GCF_000209225.1_ASM20922v1_NVE) |
NW_001834401.1: 1048129-1048182 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UAGAACCUCGGUCAUUUCAUGGCGCGAGAACCCGGGUCCCAGUCAUCAAACGUCAUUGCACAUUUGAUUGCUGUGAUCUGGUUUUCCGUGUCGAUGUAUAACAGGGAAAAGGUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UAGAACCUCGGUCAUUU- -| AG C C C C CA
CAU GGCGCG AA CCGGGUC CAGU AUCAAA GU U
GUA CUGUGC UU GGUCUAG GUCG UAGUUU CA U
GUGGAAAAGGGACAAUAU G^ CU U U U A CG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Nve-Mir-2050_5p* |
| mirBase accession | MIMAT0009824 |
|---|
| Sequence |
0- CCCGGGUCCCAGUCAUCAAACGU -23
Get sequence
|
|---|
| Mature sequence |
Nve-Mir-2050_3p |
| mirBase accession | MIMAT0009825 |
|---|
| Sequence |
31- AUUUGAUUGCUGUGAUCUGGUUU -54
Get sequence
|
|---|
