| MirGeneDB ID | Nve-Mir-2028 |
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| Family name |
MIR-2028 (all species) |
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| Seed |
AAUGUUC |
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| Species |
Starlet sea anemone (Nematostella vectensis) |
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| MiRBase ID |
nve-mir-2028
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
N. vectensis
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| Node of Origin (family) |
N. vectensis
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Genome context
(GCF_000209225.1_ASM20922v1_NVE) |
NW_001834408.1: 334216-334264 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGACAAUGAUGGUGUAGGACGAUGGAGUCUUAAUGUUCCUGCUUGUUCCUAUAUAUUAGGAACUAGCAGGAGCAUUAAGAUUACAGUCGUCAAUAAACACGGAUUACAG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AGACAAUGAUGGUGUAG- GG-| U UA
GACGAU AGUCUUAAUGUUCCUGCU GUUCCUA \
CUGCUG UUAGAAUUACGAGGACGA CAAGGAU U
GACAUUAGGCACAAAUAA ACA^ U UA
100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| Comment | There are Dicer cuts +1 and -1 on both arms. |
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Mature sequence |
Nve-Mir-2028_5p |
| mirBase accession | MIMAT0009776 |
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| Sequence |
0- UAAUGUUCCUGCUUGUUCCUAU -22
Get sequence
|
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| Star sequence |
Nve-Mir-2028_3p* |
| mirBase accession | MIMAT0009777 |
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| Sequence |
27- AGGAACUAGCAGGAGCAUUAAG -49
Get sequence
|
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