| MirGeneDB ID | Mdo-Mir-7301 |
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| Family name |
MIR-7301 (all species) |
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| Species |
Gray short-tailed opossum (Monodelphis domestica) |
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| MiRBase ID |
mdo-mir-7301
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
M. domestica
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| Node of Origin (family) |
M. domestica
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Genome context
(monDom5_add) |
4: 384562205-384562265 [-]
UCSC
Ensembl
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| Seed |
UCCUAAU |
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Precursor
(pre-Mir +30nt flank) |
GGAUCUCUAGGCUCCUUCUGGCUCUCAGACUUCCUAAUCCCCCUGCAUGUUUGAAUAGCUGGAUCUAACCAUGCCAGGGGCGCUGGGAGGUUUGCGAGUUCUUCAUGGCAUCGGCUCCUUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GGAUCUCUAGGCUCCUUCU-- U AUC -| UUUGAAUAG
GGCUC CAGACUUCCUA CCCCU GCAUG C
UUGAG GUUUGGAGGGU GGGGA CGUAC U
UUUCCUCGGCUACGGUACUUC C CGC C^ CAAUCUAGG
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut +1 on the 3p arm. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
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| Mature sequence |
Mdo-Mir-7301_5p |
| mirBase accession | MIMAT0029914 |
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| Sequence |
0- UUCCUAAUCCCCCUGCAUGUUU -22
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mdo-miR-7301-5p
|
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| Star sequence |
Mdo-Mir-7301_3p* |
| mirBase accession | MIMAT0029915 |
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| Sequence |
38- CCAUGCCAGGGGCGCUGGGAGGU -61
Get sequence
|
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| Proposed targets |
TargetScanVert: mdo-miR-7301-3p
|
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