| MirGeneDB ID | Mdo-Mir-7270 |
|---|
| Family name |
MIR-7270 (all species) |
|---|
| Seed |
AAGAUCA |
|---|
| Species |
Gray short-tailed opossum (Monodelphis domestica) |
|---|
| MiRBase ID |
mdo-mir-7270
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
M. domestica
|
|---|
| Node of Origin (family) |
M. domestica
|
|---|
Genome context
(monDom5_add) |
2: 541551024-541551080 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AGGAAGCUAAGGAAAACGAGUGAUUUGCCUUAAGAUCACAGAGUCUGAAGAGUCUGAAACCUGACUCCAGGUCUGGUGUGAUCUUGUGCAAGUCACUUAACCUCUUCAGUUUUCUGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGGAAGCUAAGGAAAAC-- CU G- -| AA CUGA
GAGUGAUUUGC UAAGAUCACA AG UCUG GAGU A
UUCACUGAACG GUUCUAGUGU UC GGAC CUCA A
UGUCUUUUGACUUCUCCAA U- GG U^ -- GUCC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Mdo-Mir-7270_5p |
| mirBase accession | MIMAT0028510 |
|---|
| Sequence |
0- UAAGAUCACAGAGUCUGAAGAGU -23
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mdo-miR-7270-5p
|
|---|
| Star sequence |
Mdo-Mir-7270_3p* |
| mirBase accession | MIMAT0028511 |
|---|
| Sequence |
35- UCCAGGUCUGGUGUGAUCUUGU -57
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mdo-miR-7270-3p
|
|---|
