| MirGeneDB ID | Mdo-Mir-12298 |
|---|
| Family name |
MIR-12298 (all species) |
|---|
| Species |
Gray short-tailed opossum (Monodelphis domestica) |
|---|
| MiRBase ID |
mdo-mir-12298
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
M. domestica
|
|---|
| Node of Origin (family) |
M. domestica
|
|---|
Genome context
(monDom5_add) |
1: 63576962-63577021 [+]
UCSC
Ensembl
|
|---|
| Seed |
CAUUCCC |
|---|
Precursor
(pre-Mir +30nt flank) |
AUUCUGAAAGGCGAUAUAAAGAGGGAGUGCUUUCCAGGAAUGGGGGAUAGCCUGCAUGAAUGCAGAGGUCAUUCCCUAUGCCUGGAGUGCUCUCUCUCUCUUUCUUCCACAUAUCCAAGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUUCUGAAAGGCGAUAUAA--| U U A AG CUGCAUG
AGAGGGAG GC UUCCAGG AUGGGGGAU C A
UCUCUCUC CG GAGGUCC UAUCCCUUA G A
UGAACCUAUACACCUUCUUUC^ U U G CU GAGACGU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second DroMdo cut +1 relative to what is annoated here. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Mdo-Mir-12298_5p* |
| mirBase accession | MIMAT0050099 |
|---|
| Sequence |
0- UUUCCAGGAAUGGGGGAUAGC -21
Get sequence
|
|---|
| Mature sequence |
Mdo-Mir-12298_3p |
| mirBase accession | MIMAT0050100 |
|---|
| Sequence |
38- UCAUUCCCUAUGCCUGGAGUGC -60
Get sequence
|
|---|
