| MirGeneDB ID | Mdo-Mir-12298 |
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| Family name |
MIR-12298 (all species) |
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| Seed |
CAUUCCC |
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| Species |
Gray short-tailed opossum (Monodelphis domestica) |
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| MiRBase ID |
mdo-mir-12298
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
M. domestica
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| Node of Origin (family) |
M. domestica
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Genome context
(monDom5_add) |
1: 63576962-63577021 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUUCUGAAAGGCGAUAUAAAGAGGGAGUGCUUUCCAGGAAUGGGGGAUAGCCUGCAUGAAUGCAGAGGUCAUUCCCUAUGCCUGGAGUGCUCUCUCUCUCUUUCUUCCACAUAUCCAAGU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AUUCUGAAAGGCGAUAUAA--| U U A AG CUGCAUG
AGAGGGAG GC UUCCAGG AUGGGGGAU C A
UCUCUCUC CG GAGGUCC UAUCCCUUA G A
UGAACCUAUACACCUUCUUUC^ U U G CU GAGACGU
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second DroMdo cut +1 relative to what is annoated here. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Mdo-Mir-12298_5p* |
| mirBase accession | MIMAT0050099 |
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| Sequence |
0- UUUCCAGGAAUGGGGGAUAGC -21
Get sequence
|
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| Mature sequence |
Mdo-Mir-12298_3p |
| mirBase accession | MIMAT0050100 |
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| Sequence |
38- UCAUUCCCUAUGCCUGGAGUGC -60
Get sequence
|
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