| MirGeneDB ID | Lpo-Novel-5 |
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| Family name |
LPO-NOVEL-5 (all species) |
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| Species |
Atlantic horseshoe crab (Limulus polyphemus) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
L. polyphemus
|
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| Node of Origin (family) |
L. polyphemus
|
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Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013673699.1: 7082-7141 [-]
Ensembl
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| Seed |
UUUAAUG |
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Precursor
(pre-Mir +30nt flank) |
AUGAAAACAAACUACAAGUUGGUUUGAAAAUUUUAAUGGACUGUAAGUGCCUGUUGAAAGAAAAGGAGACAGUUGCAGUUCAUUAAAAUUCUCAAACCUACUACGUCUACCCUGCCUGAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUGAAAACAAACUACAA--| U A G C GUUGAA
GU GGUUUGA AAUUUUAAUGGACUGUAA UG CU A
CA CCAAACU UUAAAAUUACUUGACGUU AC GA G
AAGUCCGUCCCAUCUGCAU^ U C G A GGAAAA
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Lpo-Novel-5_5p |
| mirBase accession | None |
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| Sequence |
0- UUUUAAUGGACUGUAAGUGCCU -22
Get sequence
|
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| Star sequence |
Lpo-Novel-5_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- ACAGUUGCAGUUCAUUAAAAUU -60
Get sequence
|
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